Pisum Genetics
2007—Volume 39
Genomic Resources
List of genes postulated to be on pea LG III between Fed 1 and just distal to Egl 1
Assembled by Weeden, N.F. and Moffett, M.D. Montana State Univ., Bozeman, MT, U.S.A.
The table below presents the predicted order of genes and many pseudogenes on the upper 2/3rds of pea LG III
based on Build 1 of Medicago truncatula chromosome 3 (www.medicago.org/genome/downloads/Mt1/), the known
order of genes on pea LG III and the high degree of conserved synteny known to exist between pea LG III and M.
truncatula
chromosome 3. Gaps between contigs in the M. truncatula build are usually designated by wide, shaded
horizontal bars (some rearranging and combining of contigs is presented in this table as a result of apparent
differences between the pea and M. truncatula chomosome maps and additional BLAST analysis of contig ends by
the authors). The polarity of the gene sequence within a contig is usually not known relative to the polarity of the
pea linkage group and, thus, has generally not been changed from that given in the M. truncatula build. Narrower,
unshaded horizontal gaps in the table indicate breaks within the contig. The first column provides the gene symbol
or Genbank accession for the pea ortholog of the M. truncatula gene listed in the third column. The second column
provides the approximate distance from the top of pea LG III of the pea gene based on data generated from the
JI1794 x Slow population used to develop the consensus map for pea (http://hermes.bionet.nsc.ru/pg/38). Genes
listed in bold in the third column have appropriate properties (relatively large size, relatively low copy number,
presence of introns) for use as intron-targeted sequence tagged sites. Those genes in bold and underlined are
particularly suitable for this purpose or have been used as STS markers. Build 2 of the M. truncatula genome has
been released (www.medicago.org/genome/downloads/Mt2/); however, the changes suggested by information
presented in the new build are relatively minor and have not been incorporated into the table. A list of the
abbreviations used in the table is provided at the end.

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

Fed1

0

 

 

 

Lectin-like receptor kinase

 

 

Hexose transporter

 

 

Myosin heavy chain-like

 

 

Isoflavone reductase like protein

 

 

 

 

 

Xyloglucan galactosyltransferase

 

 

Cyclin-like F box

 

 

Cyclin-like F-box

 

 

Cellulose synthase

 

 

Dimethyladenosine transferase

 

 

PK

 

 

MYST-type acetyl transferase

 

 

60S Ribosomal protein L11 (L5)

 

 

Receptor-like kinase

 

 

PK, EGF-like

 

 

ZFP

 

 

PK, EGF-like

 

 

Tetrahydrofolate DH/cyclohydrolase

AB218759

 

Cytochrome P450

 

 

Prefoldin

 

 

Aminophospholipid ATPase

 

 

 

X54844

 ---

Beta tubulin

 

 

TF E2F/dimerisation partner

Rb, AGLP

6

 

 

 

 

HMG-I and HMG-Y, DNA-binding

 

 

Cytochrome P450

 

 

 

 

 

Kelch-repeat containing F-box protein--Saposin B

 

 

Protein phosphatase 2C

 

 

Ionotropic glutamate receptor

M55147

9

cpGlyceraldehyde-3-phosphate DH

 

 

Mlo-related protein

 

 

ZFP, DHHC-type

 

 

Peptidylprolyl isomerase, FKBP-type

 

 

Ribophorin I family

 

 

General hexose transporter

 

 

Peptidase C1A (CysPr1)

 

 

General substrate transporter

 

 

Phosphatidylinositol 4-kinase, putative

 

 

BURP containing protein

 

 

PK

 

 

Adaptin, noncathrin coat protein

 

 

 

 

 

Histone deacetylase superfamily

 

 

Sugar transporter superfamily; major facilitator superfamily MFS_1

 

 

GT, family 13

 

 

Glycoside hydrolase; chitin-binding (chitinase)

 

_____________________________________________________________________________________________________
45

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Phosphoesterase, DHHA1

 

 

 

 

 

Glutamyl tRNA-reductase

 

 

Phosphoenolpyruvate carboxykinase

 

 

Beta-1,3-glucuronosyltransferase

 

 

 

 

 

S25 ribosomal protein

 

 

S-adenosyl-L methionine:salicylic acid carboxyl methyltransferase

AJ491794

 ---

Bifunctional dihydrofolate reductase/thymidylate synthase

 

 

Phosphatidylinositol transfer-like protein III

 

 

Phosphatidylinositol transfer-like protein II

 

 

Terpene synthase-like

 

 

H+-transporting two-sector ATPase, delta/epsilon subunit

 

 

Inositol monophosphatase; Histidinol-phosphate phosphatase

 

 

Kinesin-like protein

 

 

Ethylene-forming dioxygenase

 

 

Endo-1,4-beta gluconase

 

 

Dihydrouridine synthase ZFP

 

 

Purine/pyrimidine phosphoribosyl transferase

 

 

Auxin responsive SAUR protein

 

 

Calcium-binding EF-hand

 

 

Carbohydrate-binding Phytochelatin synthetase-putative

 

 

Purine nucleosidase, family 1

 

 

GT

 

 

Translocon-associated protein alpha subunit precursor

 

 

Peptidyl-prolyl cis-trans isomerase, cyclophilin type

 

 

Galactose-binding like Glycoside hydrolase, family 10

 

 

Beta galactosidase-like

 

 

Protein transporter

 

 

Glutamate 1 semialdehyde aminotransferase

 

 

ATP-dependent helicase

 

 

 

 

 

Acetylglutamate kinase

 

 

Cyclic nucleotide-binding; cation channel

 

 

Protein of unknown function DUF581

 

 

60S Ribosomal protein L10

 

 

Protein prenyltransferase-like

 

 

 

 TubA

18

Alpha tubulin

 

 

Carbohydrate kinase, FGGY

 

 

Sodium/hydrogen exchanger

 

 

Protein of unknown function DUF676

 

 

Amino acid permease AAP6

 

 

KH, type 1

 

 

Protein of unknown function DUF676

 

 

Thiolase

 

 

TPR repeat

 

 

PK

 

 

Pyrophosphate-dependent phosphofructokinase

 

 

Early nodulin 93

 

 

Prefoldin; frigida-like

 

 

Arginyl-tRNA synthetase, class Ic

 

 

PAP/25A core; Poly(A) polymerase, RNA-binding  region

 

 

Receptor kinase LRR

 

 

Amino acid permease AAP6

 

 

 

 

 

Glycoside hydrolase, family 17; X8

 

 

Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2

 

 

Protein of unknown function DUF239, plant

 

 

Plasma membrane H+ ATPase

 

 

ZFP, RING-type

 

 

Galactose oxidase, central Cyclin-like F-box

 

 

DNA-binding WRKY

 

 

ZFP, RING-type

 

 

FAD dependent oxidoreductase

 

 

FAD dependent oxidoreductase

 

 

RNA-binding region RNP-1

 

 

Ion transport protein

 

 

GT, family 2

 

 

UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter

 

 

RNA-binding region RNP-1

 

 

PK

 

 

PDI-like protein

 

 

Auxin responsive SAUR protein

 

 

26S proteasome subunit

 

 

Calcium-binding EF-hand

 

 

No apical meristem protein

 

 

PK

 

 

Dehydrin-responsive protein, BURP

 

 

FAD-dependent pyridine nucleotide-disulphide oxidoreductase

 

 

GTP-binding protein, HSR1-related

 

 

Beta-Adaptin subunit, related

 

 

 

Rms1

20

Carotenoid oxygenase

 

 

Protein of unknown function DUF810

 

 

Regulator of chromosome condensation, RCC1

 

 

ZFP, PHD

 

 

ZFP, GATA type

 

 

Unknown protein

 

 

ZFP, GATA type

 

 

Homeobox TF

 

 

LRR transmembrane protein

____________________________________________________________________________________________________
46

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Unknown protein

 

 

Lysophospholipase-like protein

 

 

 

Y14558

 

Topoisomerase I, beta

 

 

Subtilisin-like protein

 

 

At diphthine synthase, putative

Y14558

 

Topoisomerase I, beta

 

 

Protease inhibitor I4, serpin

 

 

Topoisomerase I, beta

 

 

Peptidase, subtilase

 

 

Peptidase, subtilase

 

 

Protein of unknown function DUF677

 

 

Proteasome component region PCI

 

 

H+ transporting ATPase

 

 

Pseudouridine synthase RluD

 

 

tRNA synthetase, class II, Prolyl-tRNA

 

 

2OG-Fe(II) oxygenase

 

 

AAA ATPase

 

 

Peptidase S8 and S53, subtilisin

 

 

Seringolide-induced protein 14-1-1

 

 

SAM sterol C MT

 

 

Phospholipase D, beta 1

X16082

 ---

Plastocyanin

 

 

Ornithine decarboxylase

 

 

 

 

 

Cyclin like F box, Grr1 protein

 

 

Phospholipase D

 

 

Phospholipase D

 

 

Pathogenesis-related transcriptional factor and ERF

 

 

IDS-4-like protein, putative

 

 

Helicase

 

 

Protein of unknown function DUF250

 

 

Expansin 45, endoglucanase-like

 

 

Adenine nucleotide translocator 1 (brittle 1)

 

 

Cellulose synthase; ZFP

 

 

Calcium-binding EF-hand; Homeodomain-related

 

 

ZFP, TTF-type

 

 

ZFP, RanBP2-type

 

 

Phospholipase/Carboxylesterase

 

 

Peptidyl-prolyl cis-trans isomerase, cyclophilin type

 

 

Agenet, RNA binding

 

 

GTP binding nuclear protein Ran2

 

 

Ras small GTPase, Rab type

 

 

Cyclic nucleotide-binding; Ion transport protein

 

 

HCO3-transporter, boron transporter

 

 

Deoxyxylulose-5-phosphate synthase 

 

 

 

 

 

WD-40 repeat; quinonprotein

 

 

SWIRM; amine oxidase; NAD-binding site

 

 

PK LRR

 

 

Protein of unknown function DUF726

 

 

ZFP, CONSTANS-type

 

 

Forkhead-associated; SMAD/FHA

 

 

Transcription factor, MADS-box

 

 

 

 

 

AUX/IAA protein

 

 

H+-transporting two-sector ATPase, B/B subunit

 

 

Phox-like

 

 

Plant lipid transfer/trypsin-alpha amylase inhibitor

 

 

TRAF-like MATH

 

 

Exostosin-like

 

 

C2 calcium/lipid-binding region,

 

 

Proteinase inhibitor I3

 

 

Proteinase inhibitor I3

 

 

Cysteinyl-tRNA synthetase, class Ia

 

 

Nodulin-like

 

 

Nodulin

 

 

Knotted-like KNAT3; KNOX1; KNOX2

 

 

DNA-binding region

 

 

Response regulator 12 (ARR12)

 

 

Chromosome remodeling factor, TF

 

 

Chaperonin clpA/B AAA ATPase, central region

 

 

ZFP SWIM-type

 

 

Stromal cell derived factor

 

 

Chromogranin/secretogranin

 

 

von Willebrand factor, type A, Tudor

 

 

TAF5-like RNA polymerase

 

 

WD40 associated region in TFIID subunit

 

 

DNA-binding WRKY

 

 

WRKY

 

 

Nuclear RNA polymerase IV beta subunit

 

 

Nonaspanin, transporter

 

 

Copper ion binding domain

 

 

Proton gradient regulation 3/PRR

 

 

U6 small nuclear RNA

 

 

Protein phosphatase 2C-like

 

 

Cytochrome b5

AJ000520

 

Rieske [2Fe-2S] protein Tic55

 

 

Lariat debranching enzyme

 

 

Peroxidase

 

 

ABC1 family protein

 

 

Protein phosphatase 2C

AY830922

 

Constans-like b (COLb)

 

 

Glutamate receptor, ligand channel prot

 

 

Cytokinin independent 2

 

 

Hydroxyproline rich glycoprotein

EU041722

 

FIDDLEHEAD (beta keto acyl CoA synth)

____________________________________________________________________________________________________
47

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

3-beta OH-steroid DH

 

 

Translation initiation factor eIF-3b

U4 snRNA

 

U4 snRNA

 

 

Dicer-like 3, PAZ

 

 

PPR, selenium binding

 

 

Organic cation transport protein

 

 

PK

AF533439

 

G protein alpha II subunit

 

 

Gluconase

 

 

Myosin-like protein

 

 

cp Cu-translocating HMA8

 

 

Protein of unknown function YGGT

 

 

Cyclin-like F-box

 

 

MscS Mechanosensitive ion channel

 

 

Spermine synthase

 

 

Mechanosensitive ion channel

 

 

Proteinase inhibitor I9, subtilisin propeptide

 

 

Mechanosensitive ion channel

 

 

PK

 

 

Mitochondrial substrate carrier

 

 

Heat shock protein Hsp20

LAP2?

 

Peptidase M1, membrane alanine aminopeptidase

 

 

Protein phosphatase 2C-like

 

 

PK

 

 

PK

 

 

Mitochondrial substrate carrier

 

 

IQ calmodulin-binding region

 

 

E-class P450, group I

HSFA

25

Heat shock factor (HSF)-type

 

 

Glutaredoxin-like, plant II

 

 

Mitochondrial substrate carrier

 

 

Peptidase M41

Fts4 AJ635223

FtsH-like protease

 

 

Zn and Cd transporter

 

 

Myb-like DNA-binding region, SHAQKYF class

 

 

ZFP, SWIM-type

 

 

NADH ubiquinone oxidoreductase, 20 kDa subunit

 

 

Ferrochelatase

 

 

LRR

 

 

Endopeptidase, legumain-like

 

 

Helix-loop-helix DNA-binding

 

 

ruv DNA helicase

 

 

 

 

 

S-locus like receptor

 

 

D mannose binding lectin family protein

 

 

L-asparaginase

 

 

Cyclin d3

 

 

Peptidase C1A, papain

 

 

Receptor kinase like protein

 

 

Kinesin-like protein

 

 

Heat shock protein, TTP repeat

 

 

SPla/RYanodine receptor SPRY

 

 

Pathogenesis-related TF

 

 

Polyadenylate binding protein

 

 

Polyadenylate-binding protein

 

 

Transferase

 

 

Transferase

 

 

Transferase

 

 

Heat shock TF 5

 

 

Protein of unknown function, DUF889

 

 

Basic helix-loop-helix protein

 

 

Cold-induced protein

 

 

Abscissic acid responsive elements binding factor 2

 

 

Electron transporter thiol-disulfide

 

 

PPR, putative

 

 

DEM-like protein

 

 

light harvesting complex

 

 

Chlorophyll a/b binding protein

 

 

Protein of unknown function DUF827

 

 

Laccase

 

 

Laccase (diphenol oxidase)

Tic22 (AF095284)

 ---

Tic22 (cp-specific protein)

 

 

Lipin family protein

 

 

Dihyroflavonol-4-reductase, putative

 

 

Isocitrate dehydrogenase (NAD)

 

 

Patatin-like protein

 

 

ABCF DNA binding protein

 

 

Myb, DNA-binding

 

 

EMB1427; tubulin binding

 

 

PK MAPKKK

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Histone acetyltransferase ZFP

 

 

Cyclin-like F-box

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Proteinase inhibitor I4, serpin

 

 

Protein of unknown function DUF889

 

 

Nitrate transporter, putative

 

 

Peptidase S24, S26A and S26B

 

 

LRR, Pistil-specific extensin-like protein

 

 

Prolyl-tRNA synthetase, class IIa

 

 

F-box with TIR

 

 

 

 

 

Short-chain dehydrogenase/reductase

 

 

PK

 

 

TF B3; Cupredoxin

 

 

No apical meristem protein

 

 

ZFP, Tim10/DDP-type

 

 

ZFP, DHHC-type

____________________________________________________________________________________________________
48

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

Helix-turn-helix, Fis-type, related

 

 

MtN3 and saliva related transmembrane protein

 

 

Pseudouridine synthase

 

 

Decrease in DNA methylation, acylphosphatase

 

 

Acyltransfer-like protein

 

 

Homeodomain-like SWIRM

 

 

Metal ion binding

 

 

Phosphoesterase

 

 

Nodulin-related

 

 

Heat shock protein binding

 

 

TF HAP5A-like

 

 

Acetolactate synthase (cp precursor)

 

 

ZFP, MYND-type

U15036 (NIP)

16

14-3-3 protein

 

 

serine-tRNA synthetase family

DQ092413

 

Isoamylase

 

 

Ripening responsive protein

 

 

 

 

 

Unknown protein, RF2 protein

 

 

Sabre, maize apt1, root cortex protein

 

 

SNF1-related kinase

 

 

PK

 

 

Serine protease, serpin

 

 

ABC type transport protein

 

 

Protease inhibitor

 

 

Protease inhibitor I4

 

 

Unknown protein, At binding

 

 

PK

 

 

rab geranylgeranyl transferase, putative

 

 

At hyponastic lvs 1

Win?

 

AtCER2 (cuticular wax biosynthesis), transferase

 

 

NADPH  cytochrome P450 reductase

 

 

Myb-type TF

 

 

Cell surface glycoprotein

 

 

Kinase interacting protein 1

 

 

Arginosuccinate lyase

 

 

Kinesin-like protein

PS RT17-1

 

HLH TF, auxin growth promoter, evergrowing

 

 

AtMSL (MSC-like)

 

 

DNAJ heat shock sequence

 

 

Upl1 protease

 

 

Serine carboxypeptidase

 

 

AT-hook motif DNA binding protein

 

 

Ubiquitin-specific protease

 

 

cp nucleoid DNA binding protein-related

 

 

Serpin, putative serine protease

 

 

Mitochondrial dicarboxylate carrier

 

 

Pleckstrin domain containing protein

 

 

PPR-repeat containing protein

 

 

14-3-3 protein (AtGRF8)

 

 

TF, embryo arrest

 

 

PK

 

 

WD-40 transducin

 

 

Cyclin dependent protein kinase delta 2

 

 

AtFIP1 (FH interacting protein)

 

 

 

 

 

ABC transporter 1-like

 

 

HYS1, related

 

 

ZFP; SPla/RYanodine receptor

 

 

Glycoside hydrolase, family 77

 

 

Cyclin-like F-box

 

 

Ribosomal protein L6E

 

 

Aldehyde DH family, putative

 

 

ABC transporter 1-like

 

 

DNA-binding WRKY

 

 

Glycoside hydrolase, family 17

 

 

TPR repeat

 

 

DNA-binding WRKY

Lka

16

Leucine-rich repeat, typical subtype

 

 

Protein of unknown function DUF250

 

 

Terpenoid synthases/protein prenyltransferase

 

 

DNA binding, AP2 homolog

 

 

RNA-binding region RNP-1

 

 

Alba, cp DNA binding

 

 

Protein of unknown function DUF1278

 

 

24 kDa protein SC24

 

 

TF IIS

 

 

Protein of unknown function DUF537

 

 

Protein of unknown function DUF6

 

 

Protein of unknown function DUF6,

 

 

Protein of unknown function DUF6, transmembrane

 

 

Heat shock protein DnaJ, N-terminal

 

 

Carbamoyl-phosphate synthase, GATase region

Sac3

 

Actin/actin-like

 

 

ZFP, RING-type

 

 

Cyclin-like F-box

 

 

PK

 

 

Cyclin-like F-box

 

 

N-terminal protein myristoylation

 

 

Protein of unknown function DUF167

 

 

PK

 

 

U box

 

 

Protein phosphatase 2A

 

 

Cytochrome oxidase

 

 

Ribosomal protein S2

 

 

ZFP, FYVE/PHD-type

 

 

Protein of unknown function DUF239

 

 

Ribosomal protein L17

____________________________________________________________________________________________________
49

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

GT, family 8

 

 

Pectin methylesterase-like

 

 

Auxin-independent growth promoter

 

 

Flavin containing oxidoreductase, class-II

 

 

O-MT

 

 

O-MT

 

 

Phosphatidylinositol 3- and 4-kinase, catalytic

 

 

Acetylglucosamidyltransferase

 

 

PRL1 interacting factor G

 

 

1,3-beta glucan synthase

 

 

MAKKK (alpha)

 

 

DNA ligase like

 

 

Cyclin-like F box

 

 

ABC transporter related

 

 

Polygalacturonase, putative

 

 

U box

 

 

Monovalent cation:proton antiporter

 

 

Branched chain alpha keto acid DH

 

 

ABC transporter-like

 

 

TTP-like helical

 

 

PPR-repeat-containing protein

 

 

Protein of unknown function DUF248,

 

 

Gibberellin 20-oxidase

 

 

DNA polymerase delta catalytic subunit, putative

 

 

DNA polymerase B, exonuclease

 

 

PK

AB044940

 

12-oxy-phytodienoic acid 10,11 reductase

 

 

DNA topoisomerase I, ATP-binding

 

 

Silent information regulator protein Sir2

 

 

Amino acid/polyamine transporter

 

 

Regulator of chromosome condensation/beta-lactamase-inhibitor protein II

 

 

Heat shock protein DnaJ, N-terminal

AAX56952

 

Amino acid transporter II

AAX56952

 

Amino acid/polyamine transporter

 

 

Glycoside hydrolase, family 31

 

 

Beta-galactosidase

Gal3?

35?

Beta-galactosidase

 

 

No apical meristem protein

 

 

Nucellin like protein, peptidase

 

 

Protein of unknown function DUF630

 

 

Amidase

 

 

Protein of unknown function DUF869

 

 

Octicosapeptide/Phox/Bem1p

 

 

 

 

 

Phenylacetic acid degradation-related protein

 

 

Ca-dependent PK

 

 

Ca-dependent PK

 

 

Cleft lip and palate transmembrane 1

 

 

PTP repeat

 

 

Suppressor of gene silencing 3

 

 

Suppressor of gene silencing 3

 

 

Pentatricopeptide repeat

 

 

Frigida-like

 

 

ATP-dependent clpA/B protease

 

 

Respiratory burst oxidase 1

 

 

Respiratory burst oxidase 1 (NADPH oxidase)

BAC06184

 ---

110 kd Tudor domain protein (RNA binding)

PSA17329

 ---

Calnexin precursor

 

 

Calcium-binding; Adenine nucleotide translocator

 

 

Short-chain dehydrogenase/reductase

 

 

Protein of unknown function DUF339

 

 

Phosphoinositide binding protein

Uni (AF010190)

36

Floricaula/leafy protein, FLO

 

 

AP2 domainTF

 

 

WD40-like

 

 

 

 

 

Glycoside hydrolase family 28

 

 

Exostosin-like

AM161934

 ---

Selenium binding protein

 

 

pentatricopeptide repeat

 

 

adenosylhomocysteinase (ACH1)

 

 

Aspartate kinase homoserine DH like protein

 

 

PK LRR

 

 

UDP-glucose:anthocyanin 5 O glucosyltransferase

 

 

UDP-glucose:anthocyanin 5 O glucosyltransferase

 

 

UDP-glucose:anthocyanin 5 O glucosyltransferase

 

 

ZFP, C2H2-type

 

 

SNF2-domain containing protein

 

 

Xyloglucan endotransglycosylase, putative

 

 

Xyloglucan endotransglycosylase, putative

 

 

Protein binding/transporter

 

 

ZFP, C2H2-type

 

 

Kinesin, motor region; Kinesin-related

 

 

DNA topoisomerase I

AJ621573

 ---

Phytoene desaturase

 

 

tospovirus res pro C

 SEP3

38

SEP3 MADS box

 

 

PAKRP1 (phragmoplast assoc. protein)

 

 

Phosphoribosylformylglycinamidine synthase

 

 

Nuclear transport factor 2

 

 

Histidine kinase A

____________________________________________________________________________________________________
50

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

 

 

 

 

ZFP

 

 

Plant lipid transfer/trypsin-alpha amylase inhibitor

 

 

Centromere protein B, DNA-binding region

 

 

Alkylated DNA repair protein

 

 

2OG-Fe(II) oxygenase

 

 

ZFP, MYND-type Cyclin-like F-box

 

 

DNA-binding HORMA

 

 

Mitochondrial import receptor subunit TOM20-2

 

 

Microtubule-associated protein

 

 

Engulfment and cell motility, ELM

 

 

Exostosin-like

 

 

Ribosomal protein L22/L17

 

 

AAA ATPase

 

 

GTPase EngC

 

 

Kelch repeat containing F box

 

 

Ubiquitin protein ligase

 

 

Ankyrin

 

 

Urease, gamma/beta/alpha type

 

 

PK, cell division cycle 2-like family

 

 

Monooxygenase, FAD-binding

 

 

Enoyl-CoA hydratase/isomerase

 

 

Histidine amino acid transprter

 

 

Ankyrin repeat like protein

PSY14559

 

DNA topisomerase II

 

 

Cyclin like Fbox

 

 

Cell cycle checkpoint protein MAD2

 

 

Protein of unknown function,  DUF889

 

 

Protein phosphatase 2A, regulatory B subunit, B56

 

 

Transferase

 

 

Heat shock protein Hsp20

 

 

Disease resistance protein

 

 

Response regulator, RegA/PrrA/ActR type

 

 

Receptor kinase, putative

 

 

ZFP, RING-type

 

 

Prefoldin; t-snare

 

 

Short-chain dehydrogenase/reductase

 

 

Short-chain dehydrogenase/reductase

 

 

Photosystem II core complex

 

 

60 kDa inner membrane insertion protein

X80007

 

Naringen-chalcone synthase

 

 

Pectate lyase

 

 

Chaperonin Cpn60/TCP-1 epsilon subunit

 

 

Oxysterol binding protein

 

 

Cyclic peptide transporter

 

 

O-glycosyl hydrolase, putative

 Aatc

39

 

 

 

PK

 

 

MAP kinase phosphatase and dual specificity protein

 

 

Auxin independent growth protein

 

 

Glycoside hydrolase, clan GH-D

 

 

Quinolinate synthase A-like

 

 

Protein of unknown function DUF707

 

 

Phosphoinositide-binding clathrin adaptor

 

 

ZFP, RING-type:

 

 

ZFP, RING-type

 

 

Glycoside hydrolase, family 5

 

 

ZFP, C6HC-type

 

 

LMBR1-like conserved region

 

 

Lipase, class 3

 

 

PK

 

 

Nucleolar antigen-like

 

 

Ras GTPase

 

 

Heat shock protein DnaJ, N-terminal

 

 

Receptor-like kinase

 

 

ZFP, transparent testa 1-like

 

 

Ubiquitin specific protease

 

 

Ribosomal L23 and L15e

 

 

Asparagine synthase (partial)

 

 

Cyclin-like F-box FBD

 

 

C2 calcium/lipid-binding region, CaLB (triplicated)

 

 

Cyclin-like F-box

 

 

Peroxisomal ABC transporter

 

 

TPR repeat

 

 

Lipoxygenase, LH2

 

 

Lipoxygenase, LH2

 

 

Ethylene insensitive 3

 

 

Myo-inositol-1-phosphate synthase

 

 

Transferase

 

 

Peptidase S8 and S53

 

 

Sulfate transporter

 

 

Peptidase A1, pepsin

 

 

C2 calcium/lipid-binding protein, CaLB

 

 

RNA binding protein, RNP-1

 

 

Short-chain dehydrogenase/reductase

 

 

Short-chain dehydrogenase/reductase

 

 

ZFP, RING-type

 

 

TGA basic leucine zipper

 

 

Gamma glutamyl transferase

 

 

Long chain acyl CoA synthase

 

 

Photosystem II 22kd protein precursor

MNSOD

40

 

AB087852

 

 Dof7 Zn finger

 

 

 

 

 

6-phosphogluconolactonase

 

 

GT, family 8

 

 

LRR

 

 

PK LRR

 

 

PK

 

 

Small heat shock protein

____________________________________________________________________________________________________
51

Pisum Genetics
2007—Volume 39
Genomic Resources

 

 

 

 

Pea III genes

Pea III (cM)

Identified Gene/Product in

M. truncatula

 

Pea III genes